Yingying Guo#, Qianqian Wang#, Yuhan Zhang#, Lingxue Ren#, Yuquan Wang, Yang Liu, Miao Liu, Xiaomu Tian, Qiudi Liu, Yi Chen,
Jian Sun, Tongzhu Jin, Xinyue Wang, Yanbo Wang, Tianyu Li, Yuhong
Zhou, Zhixin Li*, Yunyan Gu*, Baofeng Yang*, Haihai Liang *. Rbms1 promotes pulmonary fibrosis by stabilising Sumo2 mRNA
to facilitate Smad4-SUMOylation and fibroblast
activation. European Respiratory Journal. 2025 Jun 5:2401667. doi: 10.1183/13993003.01667-2024.
Jiayu Guo#, Yan Wang#, Qiudi Liu#, Zhaoyang Luo#, Xiaomu Tian, Yuquan Wang, Yang Liu, Zhiwei Ning, Yingying Guo,
Huiying Gao, Xinyue Wang, Jinglong Feng, Mengmeng Liu, Dina
Saifullina, Yixin Zhang, Tengfei Pan, Yu Bian, Tao Ban, Tianyu
Li, Yunyan Gu*, Haihai Liang*. Nephronectin (NPNT) is a Crucial Determinant of Idiopathic
Pulmonary Fibrosis: Modulating Cellular Senescence via the
ITGA3/YAP1 Signaling Axis. Advanced Science. 2025 May 30:e01956. doi: 10.1002/advs.202501956.
Kaidong Liu#, Yanrui Cui#, Huiming Han#, Erliang Guo, Xingyang Shi, Kai Xiong, Nan Zhang, Songmei Zhai,
Shaocong Sang, Mingyue Liu, Bo Chen, Yunyan Gu*. Fibroblast atlas: shared and specific cell types across
tissues. Science Advances. 2025 Apr 2;11(14):eado0173. doi: 10.1126/sciadv.ado0173.
Qi Dong#, Yingying Guo#, Chen Lv#, Lingxue Ren, Bo Chen, Yan Wang, Yang Liu, Mingyue Liu, Kaidong
Liu, Nan Zhang, Linzhu Wang, Shaocong Sang, Xin Li, Yang Hui*, Haihai Liang*, Yunyan Gu*. Unveiling a novel cancer hallmark by evaluation of neural
infiltration in cancer. Briefings In Bioinformatics. 2025 Mar 4;26(2):bbaf082. doi: 10.1093/bib/bbaf082.
Songliu Hu#, Ning Zhan#, Jian Li#, Liqun Wang, Yiyan Liu, Ke Jin, Yixuan
Wang, Juxuan Zhang, Yiyang Chen, Yang
Bai, Yichong Wang, Lishuang Qi*, and Shilong Liu*. RBM15 recruits myeloid-derived suppressor cells via the
m6A-IGF2BP3/CBR3-AS1/miR-409-3p/CXCL1 axis, facilitating
radioresistance in non-small-cell lung cancer. Journal of translational medicine. 2025 Feb 17;23(1):191. doi:
10.1186/s12967-025-06205-y.
Wenyue Li#, Linzhu Wang#, Wen Tian#, Weihang Ji, Danyang Bing, Yan Wang, Bingqian
Xu, Jiayue Feng, Peng Zhang, Haihai
Liang, Yunyan Gu*, Baofeng Yang*. SNRNP70 regulates the splicing of CD55 to promote
osteosarcoma progression. JCI Insight. 2024 Dec 20;9(24):e185269. doi:
10.1172/jci.insight.185269.
Minghui Cai#, Jiaxing Deng#, Shangjie Wu, Yang Cao, Hong Chen, Hao
Tang, Chendan Zou, Hui Zhu*, Lishuang Qi*. Alpha-1 antitrypsin targeted neutrophil elastase protects
against sepsis-induced inflammation and coagulation in mice via
inhibiting neutrophil extracellular trap formation. Life sciences. 2024 Sep 15:353:122923. doi:
10.1016/j.lfs.2024.122923.
Zhangxiang Zhao#, Yuquan Wang#, Zixin Jin, Huiming Han, Bo Chen, Mingyue Liu, Kaidong Liu,
Shuping Zhuang, Haihai Liang*, Yunyan Gu*. Alternative splicing of immune-related genes identifies
breast cancer subtypes with differential immune cell infiltration.
Genes & Disease. 2024 Jun 14;12(2):101349. doi:
10.1016/j.gendis.2024.101349.
Kaidong Liu#, Huiming Han#, Kai Xiong#, Songmei Zhai, Xiuqi Yang, Xinmiao Yu, Bo Chen, Mingyue Liu, Qi
Dong, Hongxue Meng
*, Yunyan Gu*. Single-cell landscape of intratumoral heterogeneity and
tumor microenvironment remolding in pre-nodal metastases of breast
cancer.
Journal of Translational Medicine. 2024 Aug 29;22(1):804. doi:
10.1186/s12967-024-05625-6.
Mingyue Liu#, Zhangxiang Zhao#, Chengyu Wang#, Shaocong Sang, Yanrui Cui, Chen Lv, Xiuqi Yang, Nan Zhang, Kai
Xiong, Bo Chen, Qi Dong, Kaidong Liu, Yunyan Gu*. Harnessing genetic interactions for prediction of immune
checkpoint inhibitors response signature in cancer
cells. Cancer Letters. 2024 Jul 10:594:216991. doi:
10.1016/j.canlet.2024.216991.
Qi Dong#, Tong Yu#, Bo Chen, Mingyue Liu, Xiang Sun, Huiying Cao, Kaidong Liu,
Huanhuan Xu, Yuquan Wang, Shuping Zhuang, Zixin Jin, Haihai Liang,
Yang Hui*, Yunyan Gu*. Mutant RB1 enhances therapeutic efficacy of PARPis in lung
adenocarcinoma by triggering the cGAS/STING pathway. JCI Insight. 2023 Nov 8;8(21):e165268. doi:
10.1172/jci.insight.165268.
Mingyue Liu#, Qi Dong#, Bo Chen, Kaidong Liu, Zhangxiang Zhao, Yuquan Wang, Shuping
Zhuang, Huiming Han, Xingyang Shi, Zixin Jin, Yang Hui*, Yunyan Gu*. Synthetic viability induces resistance to immune checkpoint
inhibitors in cancer cells. British Journal of Cancer. 2023 Oct;129(8):1339-1349. doi:
10.1038/s41416-023-02404-w.
Shanqi Xu#, Xin Li#, Jianxiong Geng, Yingyue Cao, Yan Yu*, Lishuang Qi*. Sec61γ is a vital protein in the endoplasmic reticulum
membrane promoting tumor metastasis and invasion in lung
adenocarcinoma. British Journal of Cancer. 2023 Apr;128(8):1478-1490. doi:
10.1038/s41416-023-02150-z.
Bo Chen#, Pengfei Li#, Mingyue Liu#, Kaidong Liu, Min Zou, Yiding Geng, Shuping Zhuang, Huanhuan Xu,
Linzhu Wang, Tingting Chen, Yawei Li, Zhangxiang Zhao, Lishuang
Qi*, Yunyan Gu*. A genetic map of the chromatin regulators to drug response
in cancer cells. Journal of Translational Medicine. 2022 Sep 30;20(1):438. doi:
10.1186/s12967-022-03651-w.
Tingting Chen#, Tong Yu#, Shuping Zhuang, Yiding Geng, Junwen
Xue, Jiayi Wang, Liqiang Ai, Bo Chen, Zhangxiang
Zhao, Yawei Li, Jinghao Wang, Haihai Liang, Yan
Xu*, Yunyan Gu*. Upregulation of CXCL1 and LY9 contributes to BRCAness in
ovarian cancer and mediates response to PARPi and immune checkpoint
blockade. British Journal of Cancer. 2022 Sep;127(5):916-926. doi:
10.1038/s41416-022-01836-0.
Kaidong Liu#, Yiding Geng#, Linzhu Wang#, Huanhuan Xu, Min Zou, Yawei Li, Zhangxiang Zhao, Tingting Chen,
Fengyan Xu, Liang Sun, Shuliang Wu*, Yunyan Gu*. Systematic exploration of the underlying mechanism of
gemcitabine resistance in pancreatic adenocarcinoma. Molecular Oncology. 2022 Aug;16(16):3034-3051. doi:
10.1002/1878-0261.13279.
Hailong Zheng#, Jiajing Xie#, Kai Song, Jing Yang, Huiting Xiao, Jiashuai Zhang, Keru Li,
Rongqiang Yuan, Yuting Zhao,
Yunyan Gu*and Wenyuan Zhao*. StemSC: a cross-dataset human stemness index for single-cell
samples. Stem Cell Research & Therapy. 2022 Mar 21;13(1):115. doi:
10.1186/s13287-022-02803-5.
Tingting Chen#, Yingying Guo#, Jiayi Wang#, Liqiang Ai, Lu Ma, Wenxin He, Zhixin Li, Xiaojiang Yu, Jinrui Li,
Xingxing Fan, Yunyan Gu*, Haihai Liang*. LncRNA CTD-2528L19.6 prevents the progression of IPF by
alleviating fibroblast activation.
Cell Death & Disease. 2021 Jun 10;12(6):600. doi:
10.1038/s41419-021-03884-5.
Haihai Liang#, Mengxue Yu#, Rui Yang#, Lu Zhang , Lijia Zhang, Di Zhu, Hongwei Luo, Yaozhen Hong, Tong
Yu, Jian Sun, Hongli Shan*, Yunyan Gu*. A PTAL-miR-101-FN1 axis promotes EMT and invasion-metastasis
in serous ovarian cancer. Molecular Therapy–Oncolytics. 2019 Dec 11:16:53-62. doi: 10.1016/j.omto.2019.12.002.
Chengyu Wang#, Fan Yang#, Tingting Chen, Qi Dong, Zhangxiang Zhao, Yaoyao Liu, Bo Chen,
Haihai Liang, Huike Yang*, Yunyan Gu*. RHPCG: a database of the Regulation of the Hippo Pathway in
Cancer Genome. Database (Oxford). 2019 Jan 1:2019:baz135. doi: 10.1093/database/baz135.
Ruiping Wang#, Yue Han#, Zhangxiang Zhao, Fan Yang, Ya Han, Tingting Chen, Xianlong Wang,
Lishuang Qi, Wenyuan Zhao, Zheng Guo*, Yunyan Gu*. Link synthetic lethality to drug sensitivity of cancer
cells. Briefings in Bioinformatics. 2019 Sep 6:17:688-700. doi:
10.1016/j.omtn.2019.07.003.
Yunyan Gu#, Ruiping Wang#, Yue Han, Wenbin Zhou, Zhangxiang Zhao, Tingting Chen, Yuanyuan
Zhang, Fuduan Peng, Haihai Liang, Lishuang Qi, Wenyuan Zhao, Da
Yang*, Zheng Guo*. A landscape of synthetic viable interactions in
cancer. Briefings in Bioinformatics. 2018 Jul 20;19(4):644-655. doi: 10.1093/bib/bbw142.
Wenbin Zhou#, Zhangxiang Zhao#, Ruiping Wang, Yue Han, Chengyu Wang, Fan Yang, Ya Han, Haihai
Liang, Lishuang Qi, Chenguang Wang, Zheng Guo*, Yunyan Gu**. Identification of driver copy number alterations in diverse
cancer types and application in drug repositioning. Molecular oncology. 2017 Oct;11(10):1459-1474. doi:
10.1002/1878-0261.12112.
Fuduan Peng#, Ruiping Wang#, Yuanyuan Zhang#, Zhangxiang Zhao, Wenbin Zhou, Zhiqiang Chang, Haihai Liang,
Wenyuan Zhao, Lishuang Qi, Zheng Guo*, Yunyan Gu*. Differential expression analysis at the individual level
reveals a lncRNA prognostic signature for lung
adenocarcinoma. Molecular Cancer. 2017 Jun 6;16(1):98. doi: 10.1186/s12943-017-0666-z.
Zhangxiang Zhao#, Wenbin Zhou#, Yue Han, Fuduan Peng, Ruiping Wang, Ruihan Yu, Chengyu Wang,
Haihai Liang, Zheng Guo*, Yunyan Gu*. EMT-Regulome: a database for EMT-related regulatory
interactions, motifs and network. Cell Death & Disease. 2017 Jun 15;8(6):e2872. doi: 10.1038/cddis.2017.267.
Fuduan Peng, Yuanyuan Zhang, Ruiping Wang, Wenbin Zhou, Zhangxiang
Zhao, Haihai Liang, Lishuang Qi, Wenyuan Zhao, Hongwei Wang,
Chenguang Wang, Zheng Guo*, Yunyan Gu*. Identification of differentially expressed miRNAs in
individual breast cancer patient and application in personalized
medicine. Oncogenesis. 2016 Feb 15;5(2):e194. doi: 10.1038/oncsis.2016.4.
Haihai Liang#, Yunyan Gu#, Tianyu Li, Ying Zhang, Longtao Huangfu, Meiyu Hu, Dandan Zhao,
Yang Chen, Shanshan Liu, Yuechao Dong, Li Xuelian, Lu Yanjie, Yang
Baofeng*,Shan Hongli*. Integrated analyses identify the involvement of microRNA-26a
in epithelial-mesenchymal transition during idiopathic pulmonary
fibrosis. Cell Death & Disease. 2014 May 22;5(5):e1238. doi: 10.1038/cddis.2014.207.
Yunyan Gu#, Da Yang#, Jinfeng Zou, Wencai Ma, Ruihong Wu, Wenyuan Zhao, Yuannv Zhang,
Hui Xiao, Xue Gong, Min Zhang, Zhu Jing, Zheng Guo*. Systematic interpretation of comutated genes in large-scale
cancer mutation profiles. Molecular Cancer Therapeutics. 2010 Aug;9(8):2186-95. doi:
10.1158/1535-7163.MCT-10-0022.